openBIS

Laboratory Information Management Systems (LIMS)

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This is a extensive data and workflow management platform for research environments, functioning as a digital lab notebook, inventory tracker, and metadata repository that links materials, samples, protocols, instruments, and results to enable traceability, collaboration, and reproducibility. It offers a web-based interface and programmable APIs for data capture, access control, audit trails, and long-term archiving, supports FAIR data practices, enables integration with data analysis tools such as notebooks and workflow managers, supports import/export to Excel and PDF, and provides a modular plugin architecture, making it suitable for researchers, lab staff, data stewards, and IT administrators across scientific disciplines.

openBIS can be found in Laboratory Information Management Systems (LIMS) categories.

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openBIS Main Features

• Modularity
  Create your own plugins to add new features or improve existing ones.
• Audit Trail
  Keep a record of all changes made in the database to track modifications.
• BigDataLink
  Link large datasets from different locations using openBIS as a metadata repository.
• Import/Export
  Easily import and export data in Excel formats and save lab notebooks as text or Word files.
• Data Management
  Store all your experiment data in one place, making it easy to find and use.
• Digital Notebook
  A place to write down your experiments and link them to materials and protocols.
• Inventory Management
  Keep track of all materials and samples used in your lab and share procedures with your team.
• Access and Rights Management
  Control who can see and edit your data with user profiles and access privileges.
• Integrations for Data Analysis
  Use Jupyter notebooks to analyze data and connect openBIS to your workflow for large-scale analysis.

openBIS Benefits

• FAIR Data
  openBIS makes your data Findable, Accessible, Interoperable, and Reusable, which is important for sharing and using data in research.
• Modularity
  You can create your own plugins to add new features, making openBIS flexible to fit your specific needs.
• Audit Trail
  You can track all changes made to the data, which helps in keeping everything accurate and accountable.
• Lab Notebook
  It allows you to document your experiments clearly, linking them to the materials and protocols, so you can easily refer back to them.
• Access Control
  You have full control over who can see and edit your data, ensuring that sensitive information is protected.
• Data Management
  openBIS helps you keep all your research data organized and easy to find, making it simpler to work on your projects.
• Big Data Linking
  You can connect large datasets from different places, making it easier to manage and analyze big amounts of data.
• Inventory Management
  You can track all materials and samples in your lab, which helps everyone know what is available and what has been used.
• Import/Export Features
  You can easily import and export data in formats like Excel, which helps in sharing and using data across different tools.
• Data Analysis Integration
  It works well with tools like Jupyter notebooks, allowing you to analyze data and keep your results organized in one place.

Who should use openBIS?

• Students
  Students can learn how to manage research data and collaborate with others in a supportive environment.
• Researchers
  Researchers can keep all their data organized and easily share it with their team.
• Lab Managers
  Lab managers can track all materials and samples used in experiments to ensure everything is in order.
• Data Scientists
  Data scientists can analyze large datasets and integrate their work with tools like Jupyter notebooks.
• Software Developers
  Software developers can create custom plugins to add new features and improve the system.
• System Administrators
  System administrators can control user access and manage data securely with full oversight.

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